PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G24040.1
Common NameLOC102716250
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 26071.9 Da    PI: 10.0633
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G24040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.88e-30959151
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  krien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++g+lye++s
  OB10G24040.1  9 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFAS 59
                  79***********************************************86 PP

2K-box62.61.5e-2183172998
         K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                   + +++ ++ + +   L k++e L    R+++Ge+Le +s++eL+ Le +Leksl +iR +K++ll +qi +l++ke+ l ++n++Lr k 
  OB10G24040.1  83 TIQQDIQQVKDDTLGLAKKLEALDDARRKIMGENLEGCSVEELRGLEIKLEKSLHNIRLRKTQLLEQQIAKLKEKERTLLKDNENLRGKH 172
                   5677889999999*************************************************************************9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.1E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.314161IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-31382IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-30323IPR002100Transcription factor, MADS-box
CDDcd002651.05E-41379No hitNo description
PfamPF003194.6E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-303859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-2285171IPR002487Transcription factor, K-box
PROSITE profilePS5129713.50788178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010048Biological Processvernalization response
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MVRGRTELKR IENPTSRQVT FSKRRNGLLK KAFELSVLCD AEVALIVFSP RGRLYEFASA  60
PSLQKTIERY KAYTKDHVIN NKTIQQDIQQ VKDDTLGLAK KLEALDDARR KIMGENLEGC  120
SVEELRGLEI KLEKSLHNIR LRKTQLLEQQ IAKLKEKERT LLKDNENLRG KHRNLEAAAA  180
AANHLTATPA WPRNVVPAPS SGANADAMDV ETELYIGLPG MDRFSNRPET G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-18177176Myocyte-specific enhancer factor 2B
1tqe_Q7e-18177176Myocyte-specific enhancer factor 2B
1tqe_R7e-18177176Myocyte-specific enhancer factor 2B
1tqe_S7e-18177176Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1419650.0AF141965.1 Oryza sativa MADS-box protein FDRMADS8 mRNA, complete cds.
GenBankAK0701350.0AK070135.1 Oryza sativa Japonica Group cDNA clone:J023043P08, full insert sequence.
GenBankAY5519190.0AY551919.1 Oryza sativa (japonica cultivar-group) MADS-box protein RMADS214 mRNA, complete cds.
GenBankCT8325590.0CT832559.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN008N04, full insert sequence.
GenBankEU5192290.0EU519229.1 Oryza sativa Indica Group cultivar MR84 MADS-box protein UMS1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662002.11e-171PREDICTED: MADS-box transcription factor 56
SwissprotA2Z9Q71e-146MAD56_ORYSI; MADS-box transcription factor 56
TrEMBLJ3N4F61e-170J3N4F6_ORYBR; Uncharacterized protein
STRINGOB10G24040.11e-170(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14133379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.13e-67AGAMOUS-like 19